The last game for the NES I am 99.9% sure was Wario's Woods. They joint-released it with Wario's Woods for SNES and that was the last you ever heard of the poor NES.
Only a fool scoffs at the laws of Ushido. *Takes out Katana* The might of righteousness will overcome the wrath of evil. *Eats slice of Pizza* My cause is worthy. Meow! I am the Samurai Pizza Cat!